.. _users-references:

References
==========

Studies describing pulse2percept:

.. [Beyeler2017] M Beyeler, GM Boynton, I Fine, A Rokem (2017). pulse2percept:
                 A Python-based simulation framework for bionic vision.
                 *Proceedings of the 16th Python in Science Conference*
                 *(SciPy)*, p.81-88, doi:`10.25080/shinma-7f4c6e7-00c
                 <https://doi.org/10.25080/shinma-7f4c6e7-00c>`_.

Studies referenced throughout the Documentation:

.. [Ahuja2008] AK Ahuja, MR Behrend, M Kuroda, MS Humayun, JD Weiland (2008).
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                <https://www.biorxiv.org/content/10.1101/325597v4>`_.
.. [Beyeler2019] M Beyeler, D Nanduri, JD Weiland, A Rokem, GM Boynton, I Fine
                 (2019). A model of ganglion axon pathways accounts for
                 percepts elicited by retinal implants. *Scientific Reports*
                 9(1):9199, doi:`10.1038/s41598-019-45416-4
                 <https://doi.org/10.1038/s41598-019-45416-4>`_.
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                <https://doi.org/10.1002/cne.902920402>`_.
.. [EricksonDavis2021] C Erickson-Davis, H Korzybska (2021). What do blind people 
                       "see" with retinal prostheses? Observations and qualitative
                       reports of epiretinal implant users. *PLOS ONE* 16(2), 
                       doi:`10.1371/journal.pone.0229189 <https://doi.org/10.1371/journal.pone.0229189>`_.
.. [Fernandez2017] E Fernandez & R Normann (2017). CORTIVIS Approach for an 
                   Intracortical Visual Prostheses. *Springer International Publishing*,
                   doi: `10.1007/978-3-319-41876-6_15 <https://doi.org/10.1007/978-3-319-41876-6_15>`_.
.. [Han2021] N Han, S Srivastava, A Xu, D Klein, M Beyeler (2021). Deep Learning–Based
             Scene Simplification for Bionic Vision. *Augmented Humans Conference* 2021,
             45–54. <https://doi.org/10.1145/3458709.3458982>`_.
.. [Granley2021] Granley, J., & Beyeler, M. (2021). A Computational Model of 
                 Phosphene Appearance for Epiretinal Prostheses. *International
                 Conference of the IEEE Engineering in Medicine and Biology
                 Society*, doi:`10.1109/EMBC46164.2021.9629663 <https://doi.org/10.1109/EMBC46164.2021.9629663>`_.
.. [Greenwald2009] Greenwald, S., Horsager A., Humayun M, Greenberg R.,
                   McMahon M., Fine I. (2009).
                   Brightness as a Function of Current Amplitude in Human
                   Retinal Electrical Simulation. *Investigative Ophthalmology & Visual
                   Science November 2009* Vol.50, 5017-5025, doi:`10.1167/iovs.08-2897
                   <https://doi.org/10.1167/iovs.08-2897>`_.
.. [vanderGrinten2023] M van der Grinten, J de Ruyter van Steveninck, A Lozano, 
                       L Pijnacker, B Rückauer, P Roelfsema, M van Gerven, 
                       R van Wezel, Umut Güçlü, Y Güçlütürk (2022). Biologically
                       plausible phosphene simulation for the differentiable optimization of
                       visual cortical prostheses. *bioRxiv*, 
                       doi:`10.1101/2022.12.23.521749 <https://doi.org/10.1101/2022.12.23.521749>`_.
.. [Han2021] N Han, S Srivastava, A Xu, D Klein, M Beyeler (2021). Deep learning-based 
                 scene simplification for bionic vision. *ACM Augmented Humans* 2021,
                 doi:`10.1145/3458709.3458982 <https://doi.org/10.1145/3458709.3458982>`_.
.. [Hayes2003] JS Hayes et al. (2003). Visually guided performance of
               simple tasks using simulated prosthetic vision.
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                  Greenberg, MJ McMahon, GM Boynton, I Fine (2009). Predicting
                  visual sensitivity in retinal prosthesis patients.
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                  50(4):1483-1491.
.. [Jansonius2009] NM Jansonius, J Nevalainen, B Selig, LM Zangwill, PA Sample,
                   WM Budde, JB Jonas, WA Lagreze, PJ Airaksinen, R Vonthein,
                   LA Levin, J Paetzold, U Schiefer (2009). A mathematical
                   description of nerve fiber bundle trajectories and their
                   variability in the human retina. *Vision Research* 49(17),
                   2157-63, doi:`10.1016/j.visres.2009.04.029
                   <https://doi.org/10.1016/j.visres.2009.04.029>`_.
.. [Layton2014] LN Ayton, PJ Blamey, RH Guymer, CD Luu, DAX Nayagam,
                NC Sinclair, MN Shivdasani, J Yeoh, MF McCombe, RJ Briggs,
                NL Opie, J Villalobos, PN Dimitrov, M Varsamidis, MA Petoe,
                CD McCarthy, JG Walker, N Barnes, AN Burkitt, CE Williams,
                RK Shepherd, PJ Allen, for the Bionic Vision Australia
                Research Consortium (2014). First-in-human trial of a novel
                suprachoroidal retinal prosthesis. *PLoS ONE*  9(12): e115239.
.. [Lorach2015] H Lorach, G Goetz, R Smith, X Lei, Y Mandel, T Kamins,
                K Mathieson, P Huie, J Harris, A Sher, D Palanker (2015).
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.. [Luo2016] YH Luo, JJ Zhong, M Clemo, L da Cruz (2016). Long-term Repeatability and 
             Reproducibility of Phosphene Characteristics in Chronically Implanted
             Argus(R) II Retinal Prosthesis Subjects. *Am J Ophthalmol*, 
             doi:`10.1016/j.ajo.2016.07.021 <https://doi.org/10.1016/j.ajo.2016.07.021>`_.
.. [Musk2019] E Musk & Neuralink (2019). An Integrated Brain-Machine Interface 
              Platform With Thousands of Channels. *Journal of Medical Internet Research*,
              doi: `10.2196/16194 <https://doi.org/10.2196/16194>`_.
.. [Nanduri2012] D Nanduri, I Fine, A Horsager, GM Boynton, MS Humayun,
                 RJ Greenberg, JD Weiland (2012), Frequency and amplitude
                 modulation have different effects on the percepts elicited
                 by retinal stimulation. Investigative Ophthalmology & Visual
                 Science 53:205-214, doi:`10.1167/iovs.11-8401
                 <https://doi.org/10.1167/iovs.11-8401>`_.
.. [Palanker2020] D Palanker, Y LeMer, S Mohand-Said, M Muqit, JA Sahel (2020).
                  Photovoltaic restoration of central vision in atrophic
                  age-related macular degeneration. *Ophthalmology* 1-8
.. [PerezFornos2012] A Perez Fornos, J Sommerhalder, L da Cruz, J Alain Sahel,
                     S Mohand-Said, F Hafezi, M Pelizzone (2012). Temporal Properties of
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                     <https://doi.org/10.1167/iovs.11-9344>`_.
.. [Petoe2021] MA Petoe, SA Titchener, M Kolic, WG Kentler, CJ Abbott, DAX Nayagam, 
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               <https://doi.org/10.1167/tvst.10.10.12>`_.
.. [Polimeni2006] Polimeni, J. R., Balasubramanian, M., & Schwartz, E. L. (2006). Multi-area 
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                  <https://doi.org/10.1016/j.visres.2006.03.006>`_.
.. [Stingl2013] K Stingl, KU Bartz-Schmidt, D Besch, A Braun, A Bruckmann,
                F Gekeler, U Greppmaier, S Hipp, G Hortdorfer, C Kernstock,
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                T Peters, B Wilhelm, E Zrenner (2013). Artificial vision with
                wirelessly powered subretinal electronic implant alpha-IMS.
                *Proc R Soc B 280:20130077*.
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                TL Edwards, F Gekeler, U Greppmaier, K Kiel, A Koitschev,
                L Kuhlewein, RE MacLaren, JD Ramsden, J Roider, A Rothermel,
                H Sachs, GS Schroder, J Tode, N Troelenberg, E Zrenner (2017).
                Interim results of a multicenter trial with the new electronic
                subretinal implant Alpha AMS in 15 patients blind from
                inherited retinal degenerations. *Frontiers in Neuroscience*
                11:445.
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                  (2003). Facial recognition using simulated prosthetic
                  pixelized vision.
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                  5035-5042.
.. [Troyk2003] P Troyk, M Bak, J Berg, D Bradley, S Cogan, R Erickson, C Kufta,
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               doi: `10.1046/j.1525-1594.2003.07308.x <https://doi.org/10.1046/j.1525-1594.2003.07308.x>`_.
.. [Watson2014] A.B. Watson (2014). A formula for human retinal ganglion cell
                receptive field density as a function of visual field
                location. *Journal of Vision* 14(7):1-17,
                doi:`10.1167/14.7.15 <https://doi.org/10.1167/14.7.15>`_.
.. [Weitz2015]  Weitz, A. C., Nanduri, D., Behrend, M. R., Gonzalez-Calle, A.,
                Greenberg, R. J., Humayun, M. S., ... & Weiland, J. D. (2015).
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                increasing stimulus pulse duration. Science translational medicine,
                7(318), 318ra203-318ra203.
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            *Translational Vision Science & Technology*, 10(10), 14–14. 
.. [Yue2020] L Yue, V Wuyyuru, A Gonzalez-Calle, JD Dorn, MS Humayun (2020).
             Retina–electrode interface properties and vision restoration by
             two generations of retinal prostheses in one patient—one in each
             eye. *Journal of Neural Engineering* 026020.